Retinal Pigment Epithelium (RPE) Pipeline Segmentation and Analysis Software
software
posted on 2025-04-28, 22:48 authored by Davide OrtolanDavide Ortolan, Pushkar Sathe, Andrei Volkov, Dominik Reichert, Sheldon Sebastian, Arvydas Maminishkis, Nicholas Shaub, Bengt Ljungquist, Devika Bose, Jorge Ferrari, Nyusha Lin, Gianluca PegoraroGianluca Pegoraro, Carl Simon, Ruchi Sharma, Peter Bajcsy, Kapil BhartiThis item contains a software developed for Windows systems (RPE_Pipeline-Win64) to segment and analyze retinal pigment epithelium (RPE) cell and nucleus borders and sixteen intracellular organelles and structures. Specific instructions to use the software are available at https://github.com/NIH-NEI/RPE_Pipeline
A small demo dataset (RpeMapDemoData) and training data (RpeMapTrainingData) are also included.
Funding
Developing functional and authenticated RPE tissue from iPS cells
National Eye Institute
Find out more...History
Research Institution(s)
National Eye Institute; National Institute of Standards and Technology; National Center for Advancing Translational Sciences; National Cancer InstituteContact email
kapil.bharti@nih.govAssociated Preprint DOI
I confirm there is no human personally identifiable information in the files or description shared
- Yes
I confirm the files and description shared may be publicly distributed under the license selected
- Yes
