IBS001_concordance.zip (45.89 kB)

Dataset Validation - Concordance Files

dataset

posted on 2023-08-11, 20:33 authored by Renato SantosRenato Santos, Manuel CorpasManuel Corpas

This dataset contains concordance metrics between high and low-coverage VCF files of the IBS001 genome, belonging to an IBS (Iberian Populations in Spain) individual. This genome was sequenced at 40X coverage in both Illumina and MGI sequencing platforms, and then respectively downsampled to 1x coverage with samtools. Genotype likelihood calculations and calling was performed using bcftools, and imputation of the low-coverage genotypes was performed using GLIMPSE1.

See related materials at: https://doi.org/10.25452/figshare.plus.c.6347534

History

Research Institution(s)

University of Westminster; Imperial College London

Contact email

M.Corpas@westminster.ac.uk

I confirm there is no human personally identifiable information in the files or description shared

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Yes

Competing Interest Statement

MC is associated with Cambridge Precision Medicine Ltd.

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Keywords

Whole genome sequence data low coverage whole genome sequencing Low coverage whole genome sequencing (LC WGS)low coverage genome sequencing low coverage imputation GLIMPSE loimpute Pearson r values Pearson correlation coefficients Genomics Gene Expression (incl. Microarray and other genome-wide approaches)

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