Dataset Validation - VCF Files

dataset

posted on 2024-05-13, 21:54 authored by Renato SantosRenato Santos, Manuel CorpasManuel Corpas

This dataset contains VCF format files containing the whole genome sequence of the IBS001 genome, belonging to an IBS (Iberian Populations in Spain) individual. This genome was sequenced at 40X coverage in both Illumina and MGI sequencing platforms, and then respectively downsampled to 1x coverage with samtools. Genotype likelihood calculations and calling was performed using bcftools, and imputation of the low-coverage genotypes was performed using GLIMPSE1.

See related materials at: https://doi.org/10.25452/figshare.plus.c.6347534

History

Research Institution(s)

University of Westminster; Imperial College London

Contact email

M.Corpas@westminster.ac.uk

I confirm there is no human personally identifiable information in the files or description shared

Yes

I confirm the files and description shared may be publicly distributed under the license selected

Yes

Competing Interest Statement

MC is associated with Cambridge Precision Medicine Ltd.

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Keywords

Whole genome sequence data low coverage genome sequencing Low coverage whole genome sequencing (LC WGS)low coverage whole genome sequencing low coverage imputation GLIMPSE loimpute Genomics Gene Expression (incl. Microarray and other genome-wide approaches)

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