Normal Bone Marrow CODEX Segmentation Masks

dataset

posted on 2024-04-12, 20:20 authored by Jonathan SussmanJonathan Sussman, Shovik BandyopadhyayShovik Bandyopadhyay, Kyung Jin AhnKyung Jin Ahn, Kai TanKai Tan

Whole cell segmentation masks for CODEX images using Mesmer. DAPI was used for the nuclear channel and a merged membrane channel consisting of Vimentin, CD45, and NaK-ATPase was used.

See related materials in Collection at: https://doi.org/10.25452/figshare.plus.c.7174914

History

Research Institution(s)

Children's Hospital of Philadelphia

Contact email

tank1@chop.edu

I confirm there is no human personally identifiable information in the files or description shared

I confirm the files and description shared may be publicly distributed under the license selected

Competing Interest Statement

The authors declare no competing interests.

Usage metrics

Keywords

Bone marrow CODEX Spatial proteomics Hematopoiesis Stromal cells

Licence

CC0

Exports

RefWorks

BibTeX

Ref. manager

Endnote

DataCite

NLM