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Quality-filtered soil shotgun metagenomes

dataset
posted on 2024-03-11, 21:32 authored by Kazumori MiseKazumori Mise, Yoko Masuda, Hideomi Itoh

Soil shotgun metagenomic data. We analyzed 1451 sets of publicly reusable shotgun metagenomic data from soil. The raw fastq sequences underwent merging of paired-end reads, trimming of low quality regions, and further quality filtering. This item provides the quality-filtered metagenomic sequences that are ready to be reused.

Because of the huge data size, the sequence files are grouped into 300 batches in this item. Each batch consists of one to several dozens of metagenomic data sets. Each file has been compressed using MFCompress (https://doi.org/10.1093/bioinformatics/btt594). Users are expected to decompress them using MFCompress.

Funding

Studies on nitrogen fixation of iron reducing bacteria as a key process of sustainable nitrogen fertility in paddy soil : towards low nitrogen agriculture

Japan Society for the Promotion of Science

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Studies on nitrogen fixation of iron reducing bacteria as a key process supporting sustainable nitrogen fertility of rice paddy soil : towards low nitrogen agriculture

Japan Society for the Promotion of Science

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Carbon and Nitrogen Dynamics of Paddy Soil Seen by Iron-Reducing Nitrogen-fixing Bacteria: Rice Fertilizes Soil and Soil Grows Rice

Japan Society for the Promotion of Science

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Construction of environmental microbial function database to support material cycle research

Japan Society for the Promotion of Science

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Postkoch ecosystem metagenomics that sheds light on the intraspecific diversity of bacteria and archaea

Japan Society for the Promotion of Science

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Low fertilizer biomass production by enhancing iron-reducing bacteria nitrogen fixation

Japan Science and Technology Agency

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Moonshot type R & D business

New Energy and Industrial Technology Development Organization

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History

Research Institution(s)

National Institute of Advanced Industrial Science and Technology; The University of Tokyo

Contact email

mise-33@aist.go.jp

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Competing Interest Statement

None.

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