Summary Table.xlsx (15.46 kB)

Summary Table: r2 concordance of low-coverage WGS imputation

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posted on 2022-12-16, 03:13 authored by Renato SantosRenato Santos, Manuel CorpasManuel Corpas

This table summarizes the r² concordance of low-coverage WGS imputed genotype likelihoods, of an IBS (Iberian Populations in Spain) genome, compared to the original high-coverage datasets, sequenced at 30X coverage on both Illumina and MGI platforms.

See related materials at: https://doi.org/10.25452/figshare.plus.c.6347534

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References

https://doi.org/10.25452/figshare.plus.c.6347534

Research Institution(s)

BGI Genomics; University of Westminster

Contact email

M.Corpas@westminster.ac.uk

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Competing Interest Statement

RS is an employee of BGI Genomics UK Co. Ltd. MC is associated with Cambridge Precision Medicine Ltd.

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Keywords

Whole genome sequence data Low coverage whole genome sequencing (LC WGS)low coverage whole genome sequencing low coverage genome sequencing low coverage imputation imputation concordance concordance Pearson r values Pearson correlation coefficients GLIMPSE loimpute

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