<p>This dataset contains the quality control reports generated by the Sarek pipeline for alignment and pre-processing of the FASTQ data from the severe COVID-19 patient cohort.</p><p>See related materials at: <a href="https://doi.org/10.25452/figshare.plus.c.6347534" target="_blank">https://doi.org/10.25452/figshare.plus.c.6347534</a></p>