"Mapping information-rich genotype-phenotype landscapes with genome-scale Perturb-seq" Replogle et al. 2022 SRA and GEO file manifest
These tables list the raw fastq files (found on SRA under BioProject PRJNA831566 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA831566) and associated BAM/MTX files for each lane/gemgroup of single-cell RNA-sequencing.
In these manifest files, all FASTQ files associated with a single lane/gemgroup of 10X Genomics single-cell RNA-sequencing are listed in a single row. These files can be used as input for an aligner like celllranger count, starsolo, or kallisto-bustools.
The "gemgroup" field indicates the integer value which is assigned to this gemgroup for aggregation of single-cell RNA-sequencing data in the finalized h5ad dataset.
Center for Genomic Editing and Recording: Development and Application of Next-Generation Genome and Epigenome Editing Methods to Advance the Study and Treatment of Human Disease
National Human Genome Research InstituteFind out more...
The role of TMA7 in mitochondrial dysfunction
National Institute of Neurological Disorders and StrokeFind out more...
Predictive engineering of cellular transcriptional state
National Institute of General Medical SciencesFind out more...
Cancer Center Support Grant
National Cancer InstituteFind out more...