iPSCORE Analysis: Early Developmental Regulatory Variation Mashr Results
This file contains the mashr results run on the three early developmental iPSCORE tissues and 47 adult GTEx tissues. We used mashr to calculate the tissue-specificity of pairs of eGenes and their eQTL lead variants across all 50 tissues. The file contains the following columns; gene_variant the space-separated identifier for the Gencode gene ID and the eQTL lead variant, ntissues_tested the total number of tissues that the gene_variant was tested in, ntissues_significant the total number of tissues that the gene_variant was significant (local false sign rate [LFSR] < 0.05], nipscore_tested the number of iPSCORE tissues that the gene_variant was tested in, ngtex_tested the number of GTEx tissues that the gene_variant was tested in. The remaining columns contain the mashr-calculated LFSR values for the three iPSCORE tissues and 47 GTEx tissues.
Funding
San Diego Biomedical Informatics Education & Research (SABER)
United States National Library of Medicine
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Research Institution(s)
University of California, San DiegoContact email
tdarthur40@gmail.comAssociated Preprint DOI
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