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Samuel Schafer

Publications

  • An algorithm-based meta-analysis of genome- and proteome-wide data identifies a combination of potential plasma biomarkers for colorectal cancer
  • A validated single-cell-based strategy to identify diagnostic and therapeutic targets in complex diseases
  • Bulk and single cell transcriptomic data indicate that a dichotomy between inflammatory pathways in peripheral blood and arthritic joints complicates biomarker discovery
  • Digital twins to personalize medicine.
  • Meta-Analysis of Expression Profiling Data Indicates Need for Combinatorial Biomarkers in Pediatric Ulcerative Colitis
  • Analysis of maternal and perinatal determinants of allergic sensitization in childhood
  • Analysis of expression profiling data suggests explanation for difficulties in finding biomarkers for nasal polyps.
  • Firstborn sex defines early childhood growth of subsequent siblings
  • Modelling maternal and perinatal risk factors to predict poorly controlled childhood asthma
  • Cell type identification for single cell RNA data by bulk data reference projection
  • A dynamic single cell-based framework for digital twins to prioritize disease genes and drug targets.
  • Digital twins to personalize medicine
  • Analysis of expression profiling data suggests explanation for difficulties in finding biomarkers for nasal polyps
  • scDrugPrio: A framework for the analysis of single-cell transcriptomics to address multiple problems in precision medicine in immune-mediated inflammatory diseases
  • Antigen induced arthritis (AIA) metadata along with other input data files for scDrugPrio
  • Antigen induced arthritis (AIA) metadata along with other input data files for scDrugPrio
  • scRNA-sequencing data and metadata for psoriatic arthritis (PsA) patients that were responders or non-responders to anti-IL17 treatment as well as healthy controls
  • scRNA-sequencing data and metadata for psoriatic arthritis (PsA) patients that were responders or non-responders to anti-IL17 treatment as well as healthy controls
  • scRNA-sequencing data and metadata for psoriatic arthritis (PsA) patients that were responders or non-responders to anti-TNF treatment as well as healthy controls
  • Metadata for scDrugPrio analysis of individual Crohn's disease (CD) patients' scRNA-sequencing data
  • Metadata for scDrugPrio analysis of individual Crohn's disease (CD) patients' scRNA-sequencing data
  • Metadata for scDrugPrio analysis of pooled Crohn's disease scRNA-sequencing data
  • Multiple sclerosis metadata for scDrugPrio
  • Multiple sclerosis metadata for scDrugPrio
  • scDrugPrio data sets and metadata
  • Construction and utilization of digital twins for personalized therapeutic predictions

Samuel Schafer's public data